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runner: Disable PHPCS rules that start failing after autofixing

Majavah requested to merge taavi/phpcs into master

The MathSearch repository is currently in a state where an autofixer will cause a line too be too long, and that sniff then can't be autofixed. To work around this, query the list of failing rules again after autofixing instead of relying on the same source that was used to check whether to run the autofixer or not.

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